Scaffold Ga0211732_1202750

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1202750
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9661
• Total Scaffold Genes: 32
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (75.00%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002515	Metagenome / Metatranscriptome	552	Y
F007263	Metagenome / Metatranscriptome	354	Y
F007691	Metagenome / Metatranscriptome	346	Y
F013527	Metagenome / Metatranscriptome	270	Y
F017133	Metagenome / Metatranscriptome	242	Y
F040623	Metagenome / Metatranscriptome	161	Y
F045756	Metagenome	152	Y
F070104	Metagenome	123	N
F087194	Metagenome / Metatranscriptome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_120275015	F002515	N/A	MTTKKNAEELRRLMELRRSNAASAVPSKKAYNRKKCQSELLQLKYNN
Ga0211732_120275018	F013527	GAG	MEIFEFNTFINVEAESYDEAIDVFQFQLKYGINKDNVYVADIHQLTHNNESVEV
Ga0211732_12027502	F040623	N/A	MGEGLMKVRISLEQTIDIDDAMSNDIGFELYGPPDMSTEDKVDYLMARFAEDIDTMVKYDEVLGNISVEYIED
Ga0211732_120275020	F000447	AGGAG	MGYIEIFRIDNEGAGWIDLEQATPDELFNLEVGLLNEGALFTTKEAD
Ga0211732_120275021	F007263	AGAAGG	MTSVIIDQNEFYLIKDEMLFCCDEQQFKHTCKAHGEAMGCYYCEFDYSQNCEEQH
Ga0211732_120275026	F087194	AGG	MTLEEYKQMVEAQRLASLGIALEALMKSKAIQEKMKEAK
Ga0211732_120275028	F045756	AGGGGG	MTKYNVIVSYVCESDSELEAVFALNKTLRPLSENELEKFNAFLVEEITE
Ga0211732_120275030	F017133	GAG	MFAKVSHYPKGMMNLCPCGQVVLAPALYHEGQPHWENPNKCKELFKELNK
Ga0211732_12027504	F070104	AGGAG	MLGYTETDIAIMTDAMEDAIKSGRLSDEITDGLEKAQSFLDGLWAEGYFD
Ga0211732_12027505	F007691	AGAAGG	VNTIDDLINEIYESNYSHLEFEENMGGEACDCHIHTTLNTIALYAGIEVGE