Scaffold Ga0211732_1183813

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1183813
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2268
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006385	Metagenome / Metatranscriptome	374	Y
F007263	Metagenome / Metatranscriptome	354	Y
F013527	Metagenome / Metatranscriptome	270	Y
F026557	Metagenome / Metatranscriptome	197	Y
F051126	Metagenome / Metatranscriptome	144	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_11838132	F026557	AGGCGG	MINSVLTIPCEECHSTGLIFFGDNDNFDVETCVCDFGIEQDLNLFNTPEAN
Ga0211732_11838135	F006385	AGTAGG	MILDNGTLIAIVIALAGSLSMMLVFWKQNIEQLKEIRRLQIALRTERLKK
Ga0211732_11838136	F051126	AGCAGG	MSAKPYTIQDLLVGKHYRSHSRHDEGVIQYATPRPEIWYGSDFEAYAIEVRSTRGIKNFWATVAVKVNA
Ga0211732_11838137	F007263	AGG	MIKEYLDETEFYFILDEIKFHCDEQQFIHVCKAHGETMGCYFCEFDYDKKCECEN
Ga0211732_11838139	F013527	AGAAGG	MEIFEFNTFIDVEAESYDEAIDVFQFQLKYGINKDNVYVADIKQLTNNNESVEV