Scaffold Ga0211732_1110836

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0211732_1110836

Scaffold Ga0211732_1110836

Overview

Basic Information
Taxon OID	3300020141 Open in IMG/M
Scaffold ID	Ga0211732_1110836 Open in IMG/M
Source Dataset Name	Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	SciLifeLab
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	70287
Total Scaffold Genes	59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	48 (81.36%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (100.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location
Location Name	Lake Erken, Sweden
Coordinates	Lat. (^o)	59.83763399	Long. (^o)	18.6203826	Alt. (m)		Depth (m)	10 to 20
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023777	Metagenome / Metatranscriptome	208	Y
F076100	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_111083612	F076100	GAG	MRYITNKFESIRLPVEDGLLEWLQENYPNSKYYIKED
Ga0211732_111083628	F023777	AGGA	MAVKSWYLSIVSSATHKPVFHQMFFTAPKMNEFIKENELVDKYPKPEFYFVKENY

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.