Scaffold Ga0211732_1069667

Overview

Basic Information

• Taxon OID: 3300020141
• Scaffold ID: Ga0211732_1069667
• Source Dataset Name: Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: SciLifeLab
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2404
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (100.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Lake Microbial Communities From Lake Erken, Sweden

Source Dataset Sampling Location

• Location Name: Lake Erken, Sweden
• Coordinates
  • Lat. (^o): 59.83763399
  • Long. (^o): 18.6203826
  • Depth (m): 10 to 20

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F001562	Metagenome / Metatranscriptome	670	Y
F002598	Metagenome / Metatranscriptome	544	Y
F017134	Metagenome / Metatranscriptome	242	Y
F029434	Metagenome / Metatranscriptome	188	Y
F076101	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0211732_106966710	F000447	AGGAGG	MGYIEIFRIDDEGAGWVDLSEATPTELLDLEIGLFQEGAI
Ga0211732_10696672	F017134	GAGG	MELFTVACLNYEICGAQETFDNDAEYEIYGDDYICAECYASEEMEFFETIGWSDSDALASAGFGMDEDY
Ga0211732_10696675	F076101	GGA	MYKITLAYDGNAPHWQKDYENEFEAWKDFFAFTDWGFANEYSTVNIYNSEMKCFTKIFYREERKVVEVK
Ga0211732_10696676	F002598	AGAAGG	MATKLYTIESLLVGKNYRSNSRHFSGEIVSAKPRPEIWYGDKTEAFLIEVRAGGLRNKFATIAVKVGE
Ga0211732_10696678	F001562	GAGG	MKSQFEKDLEIKESFIDLLNDVYPTVKIGYSTFTPAEILECCDPIAFSIGLIEHADYLAEMENE
Ga0211732_10696679	F029434	AGG	MKKYTFGVWLDIDAEDEEMALSLFDSVVKNAFVSDSYCFEWKEVADEIAI