Scaffold Ga0194113_10388235

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10388235
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1030
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F074876	Metagenome / Metatranscriptome	119	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_103882351	F080048	GAGG	MDKIICYSCNKSKHKLNAKKSSLLPINLLMCETCVNSKLEPRWVIILAGRSQGADYVREFVL
Ga0194113_103882352	F074876	AGAAGG	VQEYYDIVNIVYIHDEKVYGTVDNLGAFASIVKYQKEAIEYEVLLENDEFAIVDEIVFHHVEEDNG
Ga0194113_103882353	F000473	AGGAG	VSLNNSQHFYDNNHFKYGINQWTGEPNKPVFYNEEMKKKIREIKRPMLLLMDIAMYPDFLTIRLYEDNFLQFDGSKKEEVIAYVEKVKKIIESFGVRCELEGVPSARVL