NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194113_10079935

Scaffold Ga0194113_10079935


Overview

Basic Information
Taxon OID3300020074 Open in IMG/M
Scaffold IDGa0194113_10079935 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2961
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (66.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-6.1786Long. (o)29.658Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000473Metagenome / Metatranscriptome1097Y
F003582Metagenome / Metatranscriptome478Y
F011938Metagenome / Metatranscriptome285Y
F013878Metagenome / Metatranscriptome267Y
F080048Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0194113_100799351F080048AGGAGMEKILCYSCGKSKNKLDVKKSVLLPINLLMCETCISSKFEPRWVVILAGRSNGPDHVKEF
Ga0194113_100799352F011938GGAGGVKEYYDTIHIVFIHSEQCHGTVEKLGAWASVVIYTKEGIEYNELMENEEFTIVDEIVFKHIEESN
Ga0194113_100799353F000473GAGMFIDKSAAKQAEHFKHGINQWTGEPNKPVFYTPEMKKAIHDIKKPSMFIMDVVMYPDFLALRLYEDNFLQFEGTKKEMVIDYVTRVKKLIESYGVRCELEGKPSERVL
Ga0194113_100799355F013878AGGMLNLTELGVEVFIKKAQDITPYWDNYNLVIWKKDINGFTNVKGMFKENSWGTAEIISVDSNGIWKLPTKHVRHFK
Ga0194113_100799357F003582N/AMKTYKIKLDIEAEVQAFDEDDASDYINDIFGVDDEVKSVKVISVKEK
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