Scaffold Ga0194113_10004152

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10004152
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19063
• Total Scaffold Genes: 53
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (41.51%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017641	Metagenome / Metatranscriptome	239	Y
F020890	Metagenome / Metatranscriptome	221	Y
F022640	Metagenome / Metatranscriptome	213	Y
F041726	Metagenome / Metatranscriptome	159	Y
F055691	Metagenome / Metatranscriptome	138	Y
F090331	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1000415217	F020890	N/A	MESFDDIQVEDLSSFDFVEELNEGLFEEESDDKSFNAFLNSNWDF
Ga0194113_1000415233	F017641	GAG	MDQVFHYTTNWKEGIVRQMFIQQVTPEWQECDHKYVAIALNPETNKSMVMSHPRSHYETLQWVRRFCGSFCPLY
Ga0194113_1000415234	F041726	N/A	MNNYRLLIEYWVPDEDENLYEEKFIQSRSSCGKIADDYLAQDRTNLIRSVEVTPV
Ga0194113_1000415240	F022640	N/A	MRIAFLIATLALGLRVGLAAHATVNEYQEQQADRFCQIDPNYCK
Ga0194113_1000415248	F055691	N/A	MSTYTSPLTSKVYEIVETSHTRNAWDSQGNLTPYVQSVFYIYHEGKKVQFALTAEGVAESVAHLENPGPDVSSRFD
Ga0194113_100041529	F090331	N/A	VSIGLGIAIYAALVAFVSSIMAYYLKVMYPREEQQLKEKSK