Scaffold Ga0194113_10000433

Overview

Basic Information

• Taxon OID: 3300020074
• Scaffold ID: Ga0194113_10000433
• Source Dataset Name: Freshwater microbial communities from Lake Tanganyika, Tanzania - TA2015017 Mahale Deep Cast 200m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 54284
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (48.39%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location

• Location Name: Tanzania: Lake Tanganyika
• Coordinates
  • Lat. (^o): -6.1786
  • Long. (^o): 29.658
  • Depth (m): 200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012110	Metagenome / Metatranscriptome	283	Y
F012761	Metagenome / Metatranscriptome	277	Y
F036108	Metagenome	170	Y
F065305	Metagenome	127	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0194113_1000043330	F036108	AGGGGG	MSLISQRDRQLAITAFNHYIDFLSSEVEFLEKEDMLDDVNYEEYKSELTESYALVNWIKLEYQKNEN
Ga0194113_1000043387	F065305	GGA	MEIILWTCVEAQKLINNVRTSKVPDEVKAELIQIYKEHAPKTCKFTIDAKAD
Ga0194113_1000043388	F012110	N/A	MTKALLLLAWVPLLSIAAAHPLETEYPVTISCDTAWELMDIVKNDDVVHQRIEDRLLLELRRDVLTKC
Ga0194113_1000043391	F012761	N/A	MNDYWVVTDKTTGKIIAHCGEETDALMMVGFCPHKRTYRKQRYILDQVIDVFSTVDNQLPGQVGLPPAKEALPPVEIQLKLVLPESELDPVVV