Scaffold Ga0207193_1081621

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1081621
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3074
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003784	Metagenome	468	Y
F004110	Metagenome	452	Y
F026830	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_10816211	F026830	N/A	VKGETVMPVPEGNITTSDILVPVVEEVVEEVKEETTEDDLPELS
Ga0207193_10816214	F003784	GGA	MYDNDRERVGHNATDFAAYGLSHLAAGQSNTTHTHTPTTNPLVDHAAVTGYRAIGVSTEDLTSFIESFASLRANRVKGVGHSQYAIAQGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDQVLPDCE
Ga0207193_10816215	F004110	AGG	VSELHPVIYDLVPSVANTIYRRYNKHVEKDDIKQELMAWAMTRAADHTEDLMEPIEERRRHNEQRIAWQMRRVAERYARKEKASKSGYQTNDEAYYESATLGQLLPFVIASIIDGTVLEQAQEMINDGQPKGSSSPAEGGNLLANLIDIKKGFLQLEQDDQALLRMRHHEGFTLQQIAQVLECAISTADRRCDKSLRRLQDNLGGISPWQ