Scaffold Ga0207193

Basic Information
Taxon OID	3300020048 Open in IMG/M
Scaffold ID	Ga0207193_1034654 Open in IMG/M
Source Dataset Name	Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Minnesota - Twin Cities
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300020048 Open in IMG/M

Scaffold ID

Ga0207193_1034654 Open in IMG/M

Source Dataset Name

Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Minnesota - Twin Cities

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	5702
Total Scaffold Genes	18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (61.11%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	4 (50.00%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

5702

Total Scaffold Genes

18 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (61.11%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

4 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location Name	Lake Manganika, Minnesota, USA
Coordinates	Lat. (^o)	47.489552	Long. (^o)	-92.573009	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Manganika, Minnesota, USA

Coordinates

Lat. (^o)

47.489552

Long. (^o)

-92.573009

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F000671	Metagenome / Metatranscriptome	945	Y
F006346	Metagenome / Metatranscriptome	375	Y
F012975	Metagenome / Metatranscriptome	275	Y
F014140	Metagenome / Metatranscriptome	265	Y
F016396	Metagenome / Metatranscriptome	247	Y
F073544	Metagenome / Metatranscriptome	120	Y
F077310	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_103465410	F000671	GAGG	MEKILCYCCNKTKNKLNVRKSVLIPINLLMCETCITSKFEPRWVVILAGRQLGSDSVKEFIIKKRYCGNDIAASELLV
Ga0207193_103465411	F073544	AGG	VLEYYEVIKIVFIHAERLYGSVESLGLYASKVKYQKDGIEIEEVLENDEFTIMDEIIFEHVEGSN
Ga0207193_103465412	F000473	AGG	MEFINRDKDHFKYGVNEWTGEPNKPVFYTPEMAKRIRDIKKPDAALQMDIAKYPEFLAIRLYEDNFVKYEGIKKEMVIDYVGKVKKLIESYGVRCELEGVPSARILRSN
Ga0207193_103465414	F012975	GGAG	VLNLTLKGVEVFIERSKTKSQESYWDNYDLLIWKQNPGGFTNVKGMFRKDQWGITERISVSEQGIWKLPIKYVKHFK
Ga0207193_103465416	F014140	N/A	MNTYKVKLEVEAEVEAFNETDARDYVADIFNVDDEIKKVNIIKITEKNK
Ga0207193_103465418	F006346	N/A	KDIMAAQIQNKEVDAKNTQADKKLEAEIDATAARLAAKPDGEMPAEQPVDTDWDKD
Ga0207193_10346546	F016396	N/A	MQVVRLEMMVELYTQTLNNLLESQGLHAPTQLDAGKWYKAKLDTLDNE
Ga0207193_10346549	F077310	N/A	MTLDSNSVIIVIVASILSGMGTALVKEIKESKREKIRRAEREQDMLKMELKDLEIKLYKLEKDLTEWRDRYYEALQELIEVKAELEDTLIKLNHIVLHE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0207193_1034654

Overview

Ecosystem & Geography

Associated Families

Sequences