Scaffold Ga0207193_1025967

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1025967
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7021
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (94.74%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F000684	Metagenome / Metatranscriptome	938	Y
F011487	Metagenome / Metatranscriptome	290	Y
F024319	Metagenome / Metatranscriptome	206	Y
F099300	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_102596711	F099300	AGG	MAKMKTLYTEIENCEQCYGQGWQFWAQGEDFDTESCDCNPHQLFITKENN
Ga0207193_102596712	F000447	GGAG	MGYIEIFRIDNEGAGWIDLSQATDKELLDLEIGLFQEGAI
Ga0207193_102596719	F024319	AGG	MTNRIWESRNDFITNDNYVSCSAGCGRVTAWSLCVMCGGNYAEHNLLGKDVK
Ga0207193_10259675	F000684	AGG	MTLHGYTYQIGDLFTTSKTGVTGRIAGFSPINNKVTRVSLVLANGSRRLAMVKTSK
Ga0207193_10259677	F011487	AGGAG	MNDYALDEYYATTCPSCKENAVDDYEDKCTHCLLEEMSATYNEDIALEMSLGLDY