NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207193_1004293

Scaffold Ga0207193_1004293


Overview

Basic Information
Taxon OID3300020048 Open in IMG/M
Scaffold IDGa0207193_1004293 Open in IMG/M
Source Dataset NameMicrobial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Minnesota - Twin Cities
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)23406
Total Scaffold Genes52 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)46 (88.46%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location
Location NameLake Manganika, Minnesota, USA
CoordinatesLat. (o)47.489552Long. (o)-92.573009Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F001706Metagenome / Metatranscriptome648Y
F023330Metagenome210Y
F029728Metagenome / Metatranscriptome187Y
F082599Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0207193_100429315F029728AGGAGMYLNPITVDGTTYNFTEESLKELIKTDIATKRRLDAVSTEAQEAYRKLMKVRTEVHAYFTEAFDGSVDEDETTVTRDEVNALLESIGSDMLTTSWSATVEITVNITGIKATSKEEVEDIINDNIEVSGYDLDIDGQDINISEIERE
Ga0207193_100429325F023330GAGGMTNQENNNVKEIRELLHPTDYSHAMDLRGESIGDVCICGGDVFHALVAFDQGELCFYFLDGECVNCGSMVTLPYPKNEDNN
Ga0207193_100429330F000368AGGAGGMEQFKQLGLTWFRAAASAAIALYLAGETDLKTLAAAALAGFAGPLLKWLDPSAXXXXFGRGSK
Ga0207193_10042935F082599AGGAGMSYTVEEIAQLNESMEAAILSIKSANAILEEMMATGRIYVEEE
Ga0207193_100429351F001706AGGAMSLHKKQTHPEYVEGCFGCKISTLELGVGDAARDIPDKKWNAELQAYRDARSQGMQPAGTRMSDVEAAYSASETLGKAYDANTMPKTKDINKKTAEVLKEIGV
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