Scaffold Ga0207193_1003607

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1003607
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 25832
• Total Scaffold Genes: 46
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (32.61%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (27.27%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009202	Metagenome / Metatranscriptome	321	N
F009600	Metagenome	315	Y
F010908	Metagenome / Metatranscriptome	297	Y
F011218	Metagenome / Metatranscriptome	293	N
F014228	Metagenome	264	N
F015723	Metagenome / Metatranscriptome	252	Y
F024249	Metagenome	206	N
F025437	Metagenome	201	N
F039112	Metagenome	164	Y
F043238	Metagenome / Metatranscriptome	156	Y
F079994	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100360723	F043238	N/A	MKYETISQLLRQLKSADISESILKDIETIEQLHLRFAYHDALLRVPFEQWYEATFKTETK
Ga0207193_100360724	F024249	N/A	MIFTYNDLKFWLEDADLLPKSYWDALEDYDPDNKNSDEILAKFLGYVHVADFYNYEMDITYVEETYNEDGYTNTVAYPTTSIYGDAPKLADDIYTKWLNWATTVASEE
Ga0207193_100360730	F025437	N/A	MRPFELRQLKVSKEQYFARLGFADNGSRAHKESTARANGSRAHKESTARAAFVSAFRNHATLHELGEAIDKDHSSVAYAVRMHKDRLIYGDYQHYYKVACCVLEENPMATIDKPDFEAMEQELNKLNEVVAELSKYKELYLTLKRTFDEF
Ga0207193_100360731	F010908	N/A	MKQILSPFQKYECFSVDGTDYLVTDVTIIQDKDDNLVEWASEMKFKRLSDHKHFTMPITKILTNHKEGRAKRCKC
Ga0207193_100360732	F009202	N/A	MYPSDDSHDLYIREKQLMLAGTAMWLAKQAADKAKGREVQDDLLHHVMSCHYADLLLQQFIDYRQFTEGKMNEMYLANAKLRIDSEQMIYEIQRLQGIIEDQL
Ga0207193_100360734	F015723	N/A	MSKIISITPTGQWQDLFKLEVRFDNGDFGTAFAKSQTPPYAVGEDVEYTKNEKGTVKIQRANAFGGGGYTQSAPSAPSFAAKTDDRSASIIRQVALKSAVEYACAAQHDVNTILANAETFNAWMTGASSAPASHVEHFANRNDPF
Ga0207193_100360735	F039112	N/A	MTLSFSSDVYTEMVQVQQAQIQALQNKVQELEARIDVLEQQSILFI
Ga0207193_100360736	F009600	N/A	MRLSDTRQLTYKIVVGKVPSLNAFYASKHWTARVKAKELASKEVMSQLEKYDLQEIKDVHIHCKVNYRYDIDNAIMAVKFALDTFKTWGGVKDDSRKYVHSLKLVHDQSIGKDTAEITFTGLLVSE
Ga0207193_100360737	F011218	AGG	MQYYTNPAKRRKIDFILEECATLMANCDSDYQSRQQAKYKEQELLGEIAKIDLHFAIQCGYLIPDN
Ga0207193_100360739	F014228	AGCAG	VKPVLQSVVVRDTVIVTQTKYLTDTLELFKDTTIYQDKVRLQLQYIDRKVYVEATCLPDTIRVTQTKILTKEKKQRGWTLEGGAVLLMLILVGGYIVKRWVDKLTE
Ga0207193_100360741	F079994	AGCAG	MEHLQQRLDALKQQEANLLMQLDEVRVLVSAYENTLNKDDKGVG