Scaffold Ga0207193_1002881

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1002881
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29531
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (25.58%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005113	Metagenome / Metatranscriptome	411	Y
F012017	Metagenome / Metatranscriptome	284	N
F022191	Metagenome	215	N
F046246	Metagenome	151	N
F046325	Metagenome / Metatranscriptome	151	N
F050991	Metagenome / Metatranscriptome	144	N
F083888	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_100288112	F083888	N/A	MNNKMLPRSNYSPCECQSTSGDRINGIPDKVLRPARKEINVTSIGSNMKVDSKGYKVVKASPDGEPVGVGKPKKKKYVEEDDED
Ga0207193_100288122	F005113	N/A	MTKEDHKNAIVSQIQQQNLNVLVDSLAAALAEIEVLKAEVAKLKETPVG
Ga0207193_100288128	F046325	N/A	MSSDQIITEIPKEFVRKWWWEIQNGLPNEKAKVHEDQARLAAKMRQEGSTKMEGLGQMAARINSRLFFRLQGQHGNNVHEWMPEYLKDNPHLCAVGYRPKVNAARHGLTGGWLKNKD
Ga0207193_10028813	F046246	N/A	MTFSEHAFDACCREAKELGRRLTKTEWLETMQDAYDSYPHQGLIATDGSKPAKGSRIKTVDAAWLEELEQNPAYAGIDIKRELGKAQAWASIRKVGVSQMRFLNWLNKAEASQRPIQYNGAGATSFKAPSAQAASEPAGWREWVRENSTDPSNADKPWSALETVAQKYILSQLK
Ga0207193_100288132	F050991	N/A	MKKRRDPHQSPTDKFSRLRHAMFSLVGNDNFQDFIEELREMQHSTMIDLCSDVVVQNDRMTLASTGELRAYSQIIGLYDDFVQQQLQQAEADAEERNV
Ga0207193_100288136	F012017	N/A	MATKRILIGTPLKGEIPKSYFRTSLVLASAEIPNVKLDWILLDGPAVQIARNEIAAYAIENKFDELIFWDKDVLAQRNGVDVTDSALMRLIGHDCDIVTSVYASRSLDTHWHVSSLPGEEPNEQGLQKVERASIGFSKIKVSVFKKIAKDNPDRVAMLIDPNRAPRSIPELFPMELTGRNTPAYRLKEIKNALTECKNDDKLRARIEREFNVRYNEPNAFLSEDYGFCKLARESGYDIWMDSLMVLGHETKVTVPIETPKLMEMLSEPWRKDELAVIKSQLIKQNQAAKEKNNISRN
Ga0207193_100288138	F022191	N/A	MPKGVKVDGKHGKTTYSPQKLVNSLAVATLEGRGLGLKKHPALANVTNEDKRLLQRIVGITVEEFNQRLIGKLDTLADKIVDRMLDTVDETPLQTLGFNLAVAIDKRQRIAGLNATQGANVNIQVNNYGSLSKEEIVARLSGKASVPTIQSAPIDLADPNDIDAKVVRKTGAVKE