Scaffold Ga0207193_1000195

Overview

Basic Information

• Taxon OID: 3300020048
• Scaffold ID: Ga0207193_1000195
• Source Dataset Name: Microbial communities from Manganika and McQuade lakes, Minnesota, USA Combined Assembly of Gp0225457, Gp0225456, Gp0225455, Gp0225454, Gp0225453, Gp0224915
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Minnesota - Twin Cities
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 109190
• Total Scaffold Genes: 171
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 117 (68.42%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Varidnaviria → Bamfordvirae → Nucleocytoviricota → Megaviricetes → Imitervirales → Mimiviridae (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Sediment → Freshwater Lake Sediment → Sulfate-Impacted Lake Microbial Communities From Northern Minnesota

Source Dataset Sampling Location

• Location Name: Lake Manganika, Minnesota, USA
• Coordinates
  • Lat. (^o): 47.489552
  • Long. (^o): -92.573009

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000264	Metagenome / Metatranscriptome	1424	Y
F002502	Metagenome / Metatranscriptome	553	Y
F029107	Metagenome / Metatranscriptome	189	Y
F057778	Metagenome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207193_1000195120	F029107	AGG	MATTHAVVTLSNSTATRLTPNGLHTGTDITVQNLHDSAYVYLGGEGVTSSSFGYRLAPGAAWSVELSGPSPLYAITATNGSTVAILKTSLEAGN
Ga0207193_1000195140	F002502	GGA	MSNATLTVGSQFTTAKSGVSGTIQEIVKNANGTSRVRLDVNGQPRWTTVVK
Ga0207193_1000195142	F057778	AGGA	MDEQAEEIKENLADYYANPEEYTLEDFEEIFQDRDPFEFL
Ga0207193_100019555	F000264	GGA	MSNKMYTNEAWLKKRYWLDKKTPEAIAKECGVAVETIYVYLAKFKLRKSRR