NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193753_10150226

Scaffold Ga0193753_10150226


Overview

Basic Information
Taxon OID3300020034 Open in IMG/M
Scaffold IDGa0193753_10150226 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1111
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9767Long. (o)-107.0044Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001194Metagenome / Metatranscriptome750Y
F066511Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0193753_101502262F001194GGCGGMKVRTAVLGVMAGIGAIIGYGSLLAFLCLVGVQTYRWFREGAWMHVGVGDGIRIGLVYCCTKQDGGGTLAKMLHWWESPATWLGMHKVLEVMPASLALFAVSIVGNSLFIYCRDRLQQR
Ga0193753_101502263F066511N/AMPGPNEASVISLGLYSESKRAQTRVAQAQALGFNPGIADRKRNGNVYWIDIDLKPTDGLLNPSDLQGESGRIVRLEVKGCPSAGGQS

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