Scaffold Ga0182240_100884

Overview

Basic Information

• Taxon OID: 3300020032
• Scaffold ID: Ga0182240_100884
• Source Dataset Name: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6705
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (72.73%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: All Organisms → cellular organisms → Archaea (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Texas
• Coordinates
  • Lat. (^o): 30.238
  • Long. (^o): -102.628
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043707	Metagenome	155	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182240_1008846	F043707	AGG	MQSGEIIYVFEITEDMLLRIIKVSPEFEGDMYREGGIILEVLNVVTEDSDRVYEQVVEIPLTMEKASAISNILNYLAMECVNDLRQHANVLSMSIEAINKASESVDDEKRMYG