3300020032: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90

Overview

Basic Information

• IMG/M Taxon OID: 3300020032
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0118431 | Gp0208782 | Ga0182240
• Sample Name: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 31279278
• Sequencing Scaffolds: 4
• Novel Protein Genes: 5
• Associated Families: 5

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
Not Available	2
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1
All Organisms → cellular organisms → Archaea	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa
• Type: Environmental
• Taxonomy: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): terrestrial biome → planetary subsurface zone → fracking liquid
• Earth Microbiome Project Ontology (EMPO): Free-living → Non-saline → Subsurface (non-saline)

Location Information

• Location: USA: Texas
• Coordinates
  • Lat. (^o): 30.238
  • Long. (^o): -102.628
  • Alt. (m): N/A
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043707	Metagenome	155	N
F047403	Metagenome	149	N
F056203	Metagenome	137	N
F083468	Metagenome	112	N
F092975	Metagenome	106	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0182240_100332	Not Available	16572
Ga0182240_100362	Not Available	15589
Ga0182240_100613	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	9791
Ga0182240_100884	All Organisms → cellular organisms → Archaea	6705

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0182240_100332	Ga0182240_10033220	F083468	MICDKSCEIYPCFVAVPGKECKLAEYPESVQEIVRSFYRGKESFEHELRNMAARIYVKALMDGEIDVMVKVLKELAFVYKILYSNAPDEDERAWERILEVLNDDEGKGDSD
Ga0182240_100362	Ga0182240_1003626	F092975	VMVYDLPITVLMGKELTILTLYDGENEIHEVVDTTLDEEQLQKVVDKIIDEFEKRGYDWGYNELFEEMEKRGYIRVYASRKVVVNV
Ga0182240_100613	Ga0182240_1006136	F056203	MAVTITDGTTTITIDTVQSIRYALRTEAIEVPIPGLKDPMIMSIGGVSRHITIEWVETENISSELKKLADQVMSGEIFKFWNVNIEEWGVQKTGVIMSIEMSQRAGEPSVLVCRVDIVLGEPL
Ga0182240_100613	Ga0182240_1006139	F047403	MMFEDIDIKTKTDFRIGARHRVRDLNGNVIAEIETLIGTDKKEMIVILHDKDIEVRVKNG
Ga0182240_100884	Ga0182240_1008846	F043707	MQSGEIIYVFEITEDMLLRIIKVSPEFEGDMYREGGIILEVLNVVTEDSDRVYEQVVEIPLTMEKASAISNILNYLAMECVNDLRQHANVLSMSIEAINKASESVDDEKRMYG