Scaffold Ga0182240_100613

Overview

Basic Information

• Taxon OID: 3300020032
• Scaffold ID: Ga0182240_100613
• Source Dataset Name: Subsurface microbial communities from deep shales in Texas, USA - hydraulic fracturing test 4_PW_90
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9791
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Deep Subsurface → Fracking Water → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location

• Location Name: USA: Texas
• Coordinates
  • Lat. (^o): 30.238
  • Long. (^o): -102.628
  • Depth (m): 2000

Associated Families

Family	Category	Number of Sequences	3D Structure?
F047403	Metagenome	149	N
F056203	Metagenome	137	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0182240_1006136	F056203	GGAGG	MAVTITDGTTTITIDTVQSIRYALRTEAIEVPIPGLKDPMIMSIGGVSRHITIEWVETENISSELKKLADQVMSGEIFKFWNVNIEEWGVQKTGVIMSIEMSQRAGEPSVLVCRVDIVLGEPL
Ga0182240_1006139	F047403	GAG	MMFEDIDIKTKTDFRIGARHRVRDLNGNVIAEIETLIGTDKKEMIVILHDKDIEVRVKNG