Scaffold Ga0193733_1030709

Overview

Basic Information

• Taxon OID: 3300020022
• Scaffold ID: Ga0193733_1030709
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1517
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002873	Metagenome / Metatranscriptome	524	Y
F032603	Metagenome / Metatranscriptome	179	Y
F086868	Metagenome	110	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193733_10307091	F086868	AGG	MSEFTTWIESNWYALGSLLLQVAFLTAVVRFAGEILRTMRASQEQVGALVKLAVSGALSERPAPSTVTERPFLRASPYWL
Ga0193733_10307092	F002873	AGG	MYKRIVVLGIVGLLFVLGANYLLVYTLSQQVVRERERQDRVYWSTFNAIEQFGERPETGTEQKAKSALEEARQRSLNKDRVRVLQNYLEDLERCYQGERESCKKANSDMNEAIRVPRVSL
Ga0193733_10307093	F032603	GGA	MLLLLASFMVVVPGADLSAAAGNPFLGGYQSGRHDSSPYGDQEKYEHSKWHVHR