NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193726_1000026

Scaffold Ga0193726_1000026


Overview

Basic Information
Taxon OID3300020021 Open in IMG/M
Scaffold IDGa0193726_1000026 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)411624
Total Scaffold Genes413 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)319 (77.24%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.9871Long. (o)-107.0011Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002123Metagenome / Metatranscriptome591Y
F015497Metagenome / Metatranscriptome254Y
F022039Metagenome / Metatranscriptome216Y
F022483Metagenome / Metatranscriptome214Y
F026988Metagenome / Metatranscriptome196N
F033526Metagenome / Metatranscriptome177Y
F033555Metagenome / Metatranscriptome177N
F044086Metagenome / Metatranscriptome155Y
F044088Metagenome / Metatranscriptome155Y
F092494Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0193726_1000026125F033526GGAGGMKKYITIGVAALAFGVAFASVPASAQTHYGKALNDGGMVDDYNSSATPAKPLYNSATPAAPATPHYGKALNDGGITDEPSAAQKAAAAKAQTKTVQQQTAPHYGKPLNDGGF
Ga0193726_1000026152F026988N/AMYRRALRKKSRSESIRQTLGVVAVGAVLGTGLFAIADYFTEQHWVRPAPVARNAGEIYTGSVLYMPQEGRNCRQMLFDNNTGRFTDKGAVDCENAAYRGVDGSLSKQWSSSRTRVIADGFRQH
Ga0193726_1000026178F022039GGAGGMKDGVADIAKIDESLMTYDLADEVLEAAARVDGVRAITVGYCATASTSWYCLPS
Ga0193726_1000026214F022483AGGAGGMDQPVKKTDLDFDYDSYGLERRLDSEQAPDAAGYWFLAAVLFAFIAAGVIVYRAGNTEMQTAANYSSHPAAQSDPVASPPIVPR
Ga0193726_1000026237F033555AGGAMNDAAIGFDQIEELAAYEVSDEALEAAAGSEKAAYTLAYCSGLSVCPA
Ga0193726_1000026253F044086GAGGMNDTMDHLGQTDEDVFVPKYSDEDLEAAVGGNPQAFPTFTCSQPMCATGGGCGTWPGN
Ga0193726_1000026290F015497GGAGMRWGAYLAAALTMASVEAANAQTVADTIADFGLIGTWAADCTQPASSSNFLTVYAIKPSGAVSRTYYDQPDHVYNNYKITSAKRQAPDMLSYQQVWDFEGSPANIAGDRVQVLLNMADNKFQIVSSQASDGSFFVKDRKYPGSNDESPWQLRCPGK
Ga0193726_1000026330F092494GGAMNFHAVIAGLDPAIHGAATLALLWHVSMDHRVKPGGDEIRNALRKKEQTMPARRRTKSRDHPHTPKRLTPEQESAQRKAAFAAIRALFCQVTQPWHSCQRGYCRRHHCCIGEAGPGACLGRHWPLMTPAQQKTAHIEVIDGGSQRQQPQTHTEWSLRRFPPSNFVHG
Ga0193726_1000026407F002123N/AMADAEKEEPVMLPFADKEGPGWHVVVRYHEGHERRIDGFATEQEAVDWIMANAKEVDK
Ga0193726_1000026408F044088GGAMSPGEAAASYRLYAVYCADIAQTVTDSARKVALLDMAQAWARLAEVVDKDRPSDEASAAT
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