Scaffold Ga0193726_1000020

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000020
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 470597
• Total Scaffold Genes: 436
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 340 (77.98%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015004	Metagenome / Metatranscriptome	258	Y
F018971	Metagenome / Metatranscriptome	232	Y
F020232	Metagenome / Metatranscriptome	225	Y
F045388	Metagenome / Metatranscriptome	153	N
F057632	Metagenome / Metatranscriptome	136	N
F066033	Metagenome / Metatranscriptome	127	N
F066962	Metagenome / Metatranscriptome	126	N
F077529	Metagenome / Metatranscriptome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_1000020136	F066033	AGGCGG	MTTQSRAVLQRILQRRTNWAPPRESFGCPRCHVEYVIVRRQTPPGMIPACETCDQEFPPTEAGEWLIYERADA
Ga0193726_1000020137	F045388	GAGG	VRSSQLTDDDLWRVIADNTDAMSVLIEKQFELDAEAGTPDPDTRQKLMLFNVQAIDNYNRQYRDCIAEVRRRYPSI
Ga0193726_1000020138	F020232	GGGGG	MAEPSAEPIPPDFAEAFAYAVLVYEIWTPEEPGRLIQIGSRYYSIVEVCRFVDQFTDRLPERVYLKLRSYMHDHPDGKLKADLAADPSYATAVRCLRGMMERRTEDYKQPGGKEG
Ga0193726_1000020139	F015004	GAGG	MSTVKRLAWIAVGYALCVVAGCAAVTVNELRMPADVAQGSPGMVAFGDMILFVLVVGFVGLVPTWFLLKLFIEKAPRALLAIVLLAAAMGPVSWLAVRHMAGGLNPPNAPVAVSQLLGLFIAFVGIPRMVFGPVLLVIEAAAFFLVRERVTRALLLVAMLMDLVPLGIFAFHMMRATRY
Ga0193726_100002019	F066962	GAG	MNVNSFGLDLADEQILNNDLSDEALERAGGLENRAGYTIAMCSGLSSCPSAPA
Ga0193726_1000020337	F018971	N/A	MLHGKAGTQQMSDSGSKFSGVQHVAPPLAPIGINDILRDADVLLELMGKETLGVVAELANTLTVTAHEAGARDIEEAASNVRRLASGHGAVALTGAMRALTDAIARTERTLAA
Ga0193726_1000020394	F077529	GGAG	MTNGWRVGCLVAGTLAVGVAPAMAQAPIQAPRTYECAANAHCSVYCQIDGDKQMQTGAPKTVTITPLAPNNYVVELVEQNGHVQFLYLAGTKVVCNIDGLTRKAAE
Ga0193726_1000020418	F057632	GGA	MERKLNRIGKYVLFGIALFTVLLAVEMQRMSIDIFFGYGRFALWSFIGVMTVMLLVARAPFRD