Basic Information | |
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Taxon OID | 3300020021 Open in IMG/M |
Scaffold ID | Ga0193726_1000013 Open in IMG/M |
Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 626205 |
Total Scaffold Genes | 597 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 490 (82.08%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: East River, Colorado | |||||||
Coordinates | Lat. (o) | 38.9871 | Long. (o) | -107.0011 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001828 | Metagenome / Metatranscriptome | 629 | Y |
F038353 | Metagenome / Metatranscriptome | 166 | Y |
F070436 | Metagenome / Metatranscriptome | 123 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0193726_100001315 | F070436 | N/A | MQDWMLITAPLALTLYFLAFQDQFRALLSWLGALVN |
Ga0193726_1000013277 | F001828 | GGGGG | MKLYAPNVALFVIAGCLAMLGVLAAFPIALPIPALTGNPTWYIFLAWFLLAAGSAIPHSDEHNSE |
Ga0193726_1000013551 | F038353 | AGAAGG | MRLLLLIAFAGCFLNLMAPPAMATDTINFCATGTMTMGPFDEHIAEIRKANRYEKADIDELITERKAGGPDFFSTQVVIKEEQSGSGDFDLHLFQGFSDPQAKYNVVEKWHCEHDDYPVAYFVDFKVRQITGQTILVSREKGTVNIISLKTIDPNLDKPTSIKDADNHAVLCADIATGCIKTIFYGRY |
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