Scaffold Ga0193726_1000013

Overview

Basic Information

• Taxon OID: 3300020021
• Scaffold ID: Ga0193726_1000013
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 626205
• Total Scaffold Genes: 597
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 490 (82.08%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9871
  • Long. (^o): -107.0011
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001828	Metagenome / Metatranscriptome	629	Y
F038353	Metagenome / Metatranscriptome	166	Y
F070436	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193726_100001315	F070436	N/A	MQDWMLITAPLALTLYFLAFQDQFRALLSWLGALVN
Ga0193726_1000013277	F001828	GGGGG	MKLYAPNVALFVIAGCLAMLGVLAAFPIALPIPALTGNPTWYIFLAWFLLAAGSAIPHSDEHNSE
Ga0193726_1000013551	F038353	AGAAGG	MRLLLLIAFAGCFLNLMAPPAMATDTINFCATGTMTMGPFDEHIAEIRKANRYEKADIDELITERKAGGPDFFSTQVVIKEEQSGSGDFDLHLFQGFSDPQAKYNVVEKWHCEHDDYPVAYFVDFKVRQITGQTILVSREKGTVNIISLKTIDPNLDKPTSIKDADNHAVLCADIATGCIKTIFYGRY