Scaffold Ga0193738_1000010

Overview

Basic Information

• Taxon OID: 3300020020
• Scaffold ID: Ga0193738_1000010
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 144622
• Total Scaffold Genes: 140
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (13.57%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8827
  • Long. (^o): -106.9107
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012883	Metagenome	276	Y
F013192	Metagenome / Metatranscriptome	273	Y
F014562	Metagenome / Metatranscriptome	262	Y
F068965	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193738_1000010117	F013192	N/A	VLFDRFTKQTRQFIKILLRGERYPGEYKNCKDSLESIQKQLLWEEKRSDYNISVSAPGKLFISINKT
Ga0193738_1000010126	F014562	N/A	MKTILLKLITLSFFSTFICVSCNKETDVLNDNTALLIEKSWKFEIYGLDENNNGVIEEAENYMLDCEDDDVYTFYANGGGVFKGGTIPCSLDETPVINFTWRFENNGAELAIFAAPEKINRLDKNILEVYYMDVNSQGQPVKFIRRFMH
Ga0193738_100001063	F068965	N/A	MSGPYQNYYSLKPIAMHERQRIITVIIVVVVYNLVDQFLVRRHNGIDDWSVGISIVIALVLYLILIYFFGKKHLN
Ga0193738_100001088	F012883	N/A	MNSRTIINRTIILSVFAIAGYLLARSFYYGSFIGIVLALLAIAAWSLFLYKLNKMHAENDTEEVSESY