Scaffold Ga0193732_1000635

Overview

Basic Information

• Taxon OID: 3300020012
• Scaffold ID: Ga0193732_1000635
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6599
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Acidobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008728	Metagenome / Metatranscriptome	329	Y
F025130	Metagenome	203	Y
F045876	Metagenome / Metatranscriptome	152	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193732_100063511	F045876	N/A	KVYALETSDQAVKDNLSKLAWEEAKVTGTANGDTISVKSVTAAK
Ga0193732_10006357	F008728	GAG	MCPSESTGCSDASPLERAIVELQRLHEVLLSGDLEPRVLTDFRDALNRVRTAAWAAQQYVMRKETEQDSGSVLSLLVGERIRVTLQLCQAICDDLKRTDIDFQAGSLVQLHDFTRPPRP
Ga0193732_10006358	F025130	N/A	MYTEHWIVVLSLAGGILFGLAAALASSRRMPLATSAVILFLLSWYEIRMDGWEKTVAAPIRLDMFAEIPLMILCLIFGAWQIFFCRKRNGL