Scaffold Ga0193732_1000003

Overview

Basic Information

• Taxon OID: 3300020012
• Scaffold ID: Ga0193732_1000003
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 371570
• Total Scaffold Genes: 329
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 237 (72.04%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9223
  • Long. (^o): -106.9536
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001368	Metagenome	713	Y
F086047	Metagenome / Metatranscriptome	111	Y
F089338	Metagenome / Metatranscriptome	109	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193732_1000003238	F086047	GAGG	MNAEQITFPFRIRKPERNNSPSADLIGRSYVDGHATITVVGVCLNDDKRVMVERDLDGRAWSMPAWLMRLIFLEKKRAA
Ga0193732_1000003239	F089338	AGGA	MTFLLIEDALSDEEELAQENGLTVKCSWCGEIIRLDGKELALAMCQGCYARMLAEFLRAQQMNQPDSHASDR
Ga0193732_100000360	F001368	AGGAGG	MGRDSATTDRLRNLIAKLQSLTASGELHWEKQAGSAHRYARWNNHLVILGPSTPLSDTSVPRYLFITPFDSPDCIEINSDDAELGSAVIELVRKVEAASKDEAPTDPFAVTDQLLERLESHE