Scaffold Ga0193755_1000055

Overview

Basic Information

• Taxon OID: 3300020004
• Scaffold ID: Ga0193755_1000055
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1a2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 29303
• Total Scaffold Genes: 33
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 22 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9763
  • Long. (^o): -107.0041
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000574	Metagenome / Metatranscriptome	1016	Y
F058898	Metagenome / Metatranscriptome	134	Y
F078526	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0193755_10000551	F058898	N/A	LAVKLPHGGNIELEGLLFAGAITLVALGDGPLSIAVKLKHSST
Ga0193755_100005521	F000574	GAGG	MRGLVALAVVGALQAGGSRSLLPAPRSPPFSVVTLPADLRGLMSALWVENNRHWDELADQNTLTQLLGTGKPTQREYLGCLVGEVAGDTLFIRRLVQAEHLKQLQFAVAGDCDGVERLVGTFHTHPYRADSAGRALKERGLSAVDLKTFTAAPDIVTMVMWDLDSLDVATKAADGSVRHPMPLTVR
Ga0193755_100005525	F078526	GAG	VLSARLALALLACVAVRSAGQARPDTVVTLYGLLETGESSGWVLLLPDPFVVGEYRANLLSARGDDARWRRLEHHFVRAVGRVQLPQALIAIERLQEVEPPGISRAEVHPSFNQTAVLTLAAIPNRFAWRLRDGKDSGVQPLLVYTILNHGLSELDFMLPTNELLCARVRRAGDEAGWRTSLLAPIRNQERIVIRLGGVYRQFVPIPPEAAPRPGRYIAHVTLCGVADYGVETQFEVGAT