Scaffold Ga0193692_1003634

Overview

Basic Information

• Taxon OID: 3300020000
• Scaffold ID: Ga0193692_1003634
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L3a1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4017
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.9136
  • Long. (^o): -106.8951
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005437	Metagenome / Metatranscriptome	401	Y
F035042	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193692_10036341	F035042	N/A	MKNKTDSVDSSLSETMAARIEIKELKDPAHEKKITDAVAALNGIIETKIEKGA
Ga0193692_10036344	F005437	N/A	MKVLISSIAVGFVLTSVISAQDERASPAEEAKTYSEVPKQYEVGEDTISPDGRFGILYPVRDESSNEGPAFPNVLVRLKPYEVIKELDVDPAWKEMRGAPAAKWGGNQFVAIWRQMKWGNEDLVVYELVNDKIKREEKIWPEVIKYFDRDFHQRFLKKYPKESDSYTFVADNSDVKSFEFKDHKLLLNVSAENKPNLAPGPVWSAELHGIWGSRQSQVRQSRFQAWRNQCSEAGRLISKDHWSIIHRRLSTVS