NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194032_1000159

Scaffold Ga0194032_1000159


Overview

Basic Information
Taxon OID3300019938 Open in IMG/M
Scaffold IDGa0194032_1000159 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW8Nov16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7581
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (46.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031036Metagenome / Metatranscriptome183N
F056576Metagenome / Metatranscriptome137N
F095415Metagenome / Metatranscriptome105N

Sequences

Protein IDFamilyRBSSequence
Ga0194032_100015912F056576N/AMTRGESVGATFLSTAISWLTLDINPVLSAIASLFAIVLSAFLIYKTILDIKIRRKQLK
Ga0194032_100015915F031036N/AMNPAEFLVILGGGNYAAPIWDTYAAYVTADSGTLEARDCTINAIADLL
Ga0194032_10001594F095415N/AMSHEVSSDLVKTIRMNGCNQMKGDMIRWLGEHPKASALDLVKHFCGTIWMSGSLEDGRYKEGQNFNP

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