NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194022_1000114

Scaffold Ga0194022_1000114


Overview

Basic Information
Taxon OID3300019937 Open in IMG/M
Scaffold IDGa0194022_1000114 Open in IMG/M
Source Dataset NameFreshwater microbial communities from the Broadkill River, Lewes, Delaware, United States ? IW29Aug16_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10675
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (86.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameUSA: Delaware
CoordinatesLat. (o)38.7906Long. (o)-75.1638Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000325Metagenome / Metatranscriptome1296Y
F010910Metagenome / Metatranscriptome297Y
F059919Metagenome / Metatranscriptome133Y
F082612Metagenome / Metatranscriptome113N
F088816Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0194022_10001141F088816N/APSMNDYRQYFATMTTELLEVWIEVAERKLPHYTRIEEVETVKAALIAARCALAAR
Ga0194022_100011412F010910GGAGMMTLYTIFGMFVGFEGYDNGKVYFGIYTPQCEYGYVLTQNEIYLDTILEKSQD
Ga0194022_100011418F059919AGGAGGMIQLDPASLAIGYAAGTLLCWYLNQTLNAKESEYEREDDGATEKDLTHYKSSIYGWNYPYDHFTPDRK
Ga0194022_100011422F000325GGAGMKTANGNDKLGKENCIVVSRPVGDTCPSTCAFLGNGCYAEQTEKIYPGVRPAGMQNVITERGRIRSMIIDAERKGKSIRWHERGDWFLDGKLDTDYVDNVVWACESILADGGSLPDMWFYTHIYDSRLVSLDKYMSVYASVHNAQDVLDAKAVGFKLFAWCDSDEKIATKRPRGKAKAQQWRDSLPKLVVIDNEKYVTCPEIRRGRGVVTCTPTKNSVACNLCVKGLGNVLFPSH
Ga0194022_10001143F082612GGAGMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRVRHADWLEKEYAWETERAIRGGTGWS
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