Metagenome / Metatranscriptome Family F082612

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F082612
Family Type	Metagenome / Metatranscriptome
Number of Sequences	113
Average Sequence Length	80 residues
Representative Sequence	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS
Number of Associated Samples	72
Number of Associated Scaffolds	113

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	59.65 %
% of genes near scaffold ends (potentially truncated)	47.79 %
% of genes from short scaffolds (< 2000 bps)	88.50 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model
Column number x ScaleMaximum Observed Maximum Theoretical Color SchemeDefault Consensus Colors CoordinatesModel Alignment

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Most Common Taxonomy
Group	Unclassified (84.071 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (66.372 % of family members)
Environment Ontology (ENVO)	Unclassified (66.372 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (93.805 % of family members)

Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112. 1Ga0075474_102270392 2Ga0075461_101548991 3Ga0070749_100176778 4Ga0070749_100899722 5Ga0070749_101316623 6Ga0075481_103453161 7Ga0075477_100687924 8Ga0075477_103538452 9Ga0075479_102697751 10Ga0075475_103025612 11Ga0070750_102562373 12Ga0070750_103525361 13Ga0070750_104658243 14Ga0070746_100866754 15Ga0070746_103706751 16Ga0075460_101102833 17Ga0070745_12270261 18Ga0070745_12542931 19Ga0070753_10682463 20Ga0070751_10876041 21Ga0070751_12415481 22Ga0102951_11241142 23Ga0102954_10398814 24Ga0102963_13081092 25Ga0129342_10134139 26Ga0182078_101820913 27Ga0182078_102741732 28Ga0182078_109514042 29Ga0182063_15724311 30Ga0181584_100297058 31Ga0181584_103043971 32Ga0181607_103511232 33Ga0181577_103447733 34Ga0181577_104375982 35Ga0181583_100902676 36Ga0181583_103995343 37Ga0181583_105900321 38Ga0181583_108236471 39Ga0181580_103681622 40Ga0181580_107942322 41Ga0181580_109334211 42Ga0181571_106507812 43Ga0181582_109146862 44Ga0181581_104513272 45Ga0181581_106526121 46Ga0181589_103105962 47Ga0181589_104351851 48Ga0181590_101771025 49Ga0181590_110173831 50Ga0181585_101515106 51Ga0181585_105911941 52Ga0181576_105130321 53Ga0181576_106587251 54Ga0181569_102535063 55Ga0181569_110392391 56Ga0181600_101582164 57Ga0181579_106380592 58Ga0181579_106856581 59Ga0181601_100660742 60Ga0181601_101552994 61Ga0181606_106383671 62Ga0181572_103750541 63Ga0181572_104476003 64Ga0181572_107251382 65Ga0181592_103786952 66Ga0181593_107285093 67Ga0181593_112096581 68Ga0181591_105237183 69Ga0181591_107852522 70Ga0181591_111131351 71Ga0181566_107580951 72Ga0181566_110395601 73Ga0181568_103038424 74Ga0181568_108261421 75Ga0181568_112237671 76Ga0194022_10001143 77Ga0181595_103119451 78Ga0181575_100337669 79Ga0181575_104806431 80Ga0181574_103083992 81Ga0181574_105560113 82Ga0181588_102129021 83Ga0181578_1000856115 84Ga0181578_103468702 85Ga0181578_103895601 86Ga0181570_103158681 87Ga0213866_104471531 88Ga0222718_100676895 89Ga0196899_11362501 90Ga0255781_100297085 91Ga0255780_101704281 92Ga0255770_100260181 93Ga0255754_103036412 94Ga0255778_101065011 95Ga0255778_102483751 96Ga0255774_101075663 97Ga0255784_102513611 98Ga0255760_105438261 99Ga0255761_101379621 100Ga0255761_105126021 101Ga0255776_103846122 102Ga0255777_105591881 103Ga0255772_101478184 104Ga0255763_11626164 105Ga0208149_11504432 106Ga0208899_11273282 107Ga0208767_10408936 108Ga0208917_11517242 109Ga0208917_12758701 110Ga0208644_12189722 111Ga0209929_10078603 112Ga0348335_051422_1294_1530 113Ga0348335_075536_898_1158
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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112. 1Ga0075474_102270392 2Ga0102963_13081092 3Ga0181572_104476003
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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.
ID â†‘ ID â†“ Label â†‘ Label â†“ Seq â†‘ Seq â†“ Identity â†‘ Identity â†“ Gaps â†‘ Gaps â†“ Consensus to top Sorting Hide columns by threshold Hide columns by selection Hide columns by gaps Hide seqs by identity Hide seqs by selection Hide seqs by gaps Reset Filter Find Motif (supports RegEx) Invert columns Invert rows Reset Selection Hide residues indices Hide ID/Label Show meta info (Gaps/Ident) Show overview panel Show sequence logo Show gap weights Show conservation weights Show scale slider Hide Label Hide ID Hide gaps % Hide identity score Reset Vis.elements Taylor Buried Cinema Clustal Clustal2 Helix Hydrophobicity Lesk MAE Nucleotide Purine PID Strand Turn Zappo No color Color scheme Add consensus seq Jump to a column Extras Share view (URL)â†ª View in Jalview Export alignment (FASTA) Export alignment (URL) Export selected sequences (FASTA) Export features (GFF) Export MSA image (PNG) Export About the project Report issues User manual Help IDLabel .2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.74.76.78.80.82.84.86.88.90.92.94.96.98.100.102.104.106.108.110.112. 1Ga0075474_102270392 2Ga0102963_13081092 3Ga0181572_104476003
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 71.79% β-sheet: 0.00% Coil/Unstructured: 28.21%
Feature Viewer
Position : 0 Zoom : x 1 + Add Multiple Variants Enter the variants Position Original Variant Get Predictions Get Predictions Enter the variants Position Original Variant A / Ala R / Arg N / Asn D / Asp C / Cys E / Glu Q / Gln G / Gly H / His I / Ile L / Leu K / Lys M / Met F / Phe P / Pro S / Ser T / Thr W / Trp Y / Tyr V / Val
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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 113 Family Scaffolds
PF04542	Sigma70_r2	1.77
PF13522	GATase_6	0.88

COG ID	Name	Functional Category	% Frequency in 113 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.77
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.77
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.77
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.77

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	15.93 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	3.54 %
Unclassified	root	N/A	84.07 %
Viruses	superkingdom	All Organisms → Viruses	12.39 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.54 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	2.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	2.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	2.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	2.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	2.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Name	Rank	Taxonomy	Distribution
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %
unclassified Flavobacteriales	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales	2.65 %

Name	Rank	Taxonomy	Distribution
Flavobacteriales bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium	2.65 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	12.39 %
Unclassified	root	N/A	84.07 %

Visualization
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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300006025\|Ga0075474_10227039	Not Available	567	Open in IMG/M
3300006637\|Ga0075461_10154899	Not Available	701	Open in IMG/M
3300006802\|Ga0070749_10017677	Not Available	4543	Open in IMG/M
3300006802\|Ga0070749_10089972	Not Available	1824	Open in IMG/M
3300006802\|Ga0070749_10131662	All Organisms → Viruses → Predicted Viral	1464	Open in IMG/M
3300006868\|Ga0075481_10345316	Not Available	514	Open in IMG/M
3300006869\|Ga0075477_10068792	All Organisms → Viruses → Predicted Viral	1552	Open in IMG/M
3300006869\|Ga0075477_10353845	Not Available	576	Open in IMG/M
3300006870\|Ga0075479_10269775	Not Available	672	Open in IMG/M
3300006874\|Ga0075475_10302561	Not Available	659	Open in IMG/M

Showing 1 to 10 of 113 entries

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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	0.89%
Marine	Environmental → Aquatic → Marine	95.58%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	3.54%

Habitat	Taxonomy	Distribution
Coastal	Environmental → Aquatic → Marine → Coastal	28.32%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	66.37%
River	Environmental → Aquatic → Freshwater → River	0.89%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	3.54%
Unclassified	Environmental → Aquatic → Marine → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	66.37%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	28.32%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	3.54%
Unclassified	Environmental → Aquatic → Freshwater → River → Unclassified	0.89%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	0.89%

Habitat	Taxonomy	Distribution
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	26.55%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	0.89%
Freshwater	Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater	0.89%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	0.89%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	1.77%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	66.37%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	0.89%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	1.77%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300006025	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_<0.8_DNA	Environmental	Open in IMG/M
3300006637	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_>0.8_DNA	Environmental	Open in IMG/M
3300006802	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18	Environmental	Open in IMG/M
3300006868	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_N_>0.8_DNA	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300006874	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_D_>0.8_DNA	Environmental	Open in IMG/M
3300006916	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_24	Environmental	Open in IMG/M
3300006919	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_21	Environmental	Open in IMG/M
3300007234	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_15_<0.8_DNA	Environmental	Open in IMG/M

Showing 1 to 10 of 72 entries

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Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0075474_102270392	3300006025	Aqueous	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS*
Ga0075461_101548991	3300006637	Aqueous	MLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0070749_100176778	3300006802	Aqueous	MSVFYKMTTKELDAWIREGGKDLCDNAQTYTAAKYSLVANMVRSAVREKLRRIRHADYMQREYAWETERAIRGGTGWS*
Ga0070749_100899722	3300006802	Aqueous	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWG*
Ga0070749_101316623	3300006802	Aqueous	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS*
Ga0075481_103453161	3300006868	Aqueous	EKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS*
Ga0075477_100687924	3300006869	Aqueous	NRHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS*
Ga0075477_103538452	3300006869	Aqueous	WIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS*
Ga0075479_102697751	3300006870	Aqueous	MTTYEKMTTRELDAWIREGGKDLSENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS*
Ga0075475_103025612	3300006874	Aqueous	RHPLENDRMTTYEKMTTRELDAWIREGGKDLSENAQTYTPAKYRLVAHMVRSAVREKLRRVHHADWLEREYAWETERAIRGGTGWS*
Ga0070750_102562373	3300006916	Aqueous	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRVRHADWLEKEYAWETERAIRGGTGWS*
Ga0070750_103525361	3300006916	Aqueous	YEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS*
Ga0070750_104658243	3300006916	Aqueous	MSVFYKMTTKELDAWVREGGKDLCDNAQTYTAAKYSLVANMVRSAVREKLRRIRHADYMQREYAWETERAIRGGTGWS*
Ga0070746_100866754	3300006919	Aqueous	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEREYAWETERAIRGGTGWS*
Ga0070746_103706751	3300006919	Aqueous	RMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS*
Ga0075460_101102833	3300007234	Aqueous	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS*
Ga0070745_12270261	3300007344	Aqueous	RHPLENDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEREYAWETERAIRGGTGWS*
Ga0070745_12542931	3300007344	Aqueous	TRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS*
Ga0070753_10682463	3300007346	Aqueous	GDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS*
Ga0070751_10876041	3300007640	Aqueous	YEKMTTRELDAWIREGGKDLSENAQAYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS*
Ga0070751_12415481	3300007640	Aqueous	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEREYAWETERAIRGGTGWS*
Ga0102951_11241142	3300007725	Water	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRVRHADWLEKEYAWETERAIRGGTGWS*
Ga0102954_10398814	3300007778	Water	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS*
Ga0102963_13081092	3300009001	Pond Water	KEWLPLQNNMLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS*
Ga0129342_10134139	3300010299	Freshwater To Marine Saline Gradient	MTTYEKMTTRELDAWIREGGKDLSENAQAYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTG
Ga0182078_101820913	3300016747	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYKLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRG
Ga0182078_102741732	3300016747	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHTDWLEKEYAWETERAIRGGTGWS
Ga0182078_109514042	3300016747	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0182063_15724311	3300016781	Salt Marsh	ENDRMTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWS
Ga0181584_100297058	3300017949	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYKLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0181584_103043971	3300017949	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRVHHADWLEREYAWETERAIRGGTGWS
Ga0181607_103511232	3300017950	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181577_103447733	3300017951	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEREYAWETERAIRGGTGWS
Ga0181577_104375982	3300017951	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHEDYMEREYAWETERAIRGGTGWS
Ga0181583_100902676	3300017952	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRLHHADWLEREYAWETERAIRGGTGWS
Ga0181583_103995343	3300017952	Salt Marsh	MLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSKKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181583_105900321	3300017952	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRVHHADWLEREYAWETERAIRGGTGW
Ga0181583_108236471	3300017952	Salt Marsh	MLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181580_103681622	3300017956	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181580_107942322	3300017956	Salt Marsh	LKRWESLDPPKEWLHWLLNMLDSVKVNRHPLENDKMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181580_109334211	3300017956	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIR
Ga0181571_106507812	3300017957	Salt Marsh	ENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181582_109146862	3300017958	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRVHHADWLEKEYAWETERAIRGGTGWS
Ga0181581_104513272	3300017962	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQAYTSKKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181581_106526121	3300017962	Salt Marsh	RMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181589_103105962	3300017964	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181589_104351851	3300017964	Salt Marsh	NRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSKKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181590_101771025	3300017967	Salt Marsh	MSVFYKMTTKELDAWIREGGKDLCDNAQTYTAAKYGLVANMVRSAVREKLRRIRHADYMQREYAWETERAIRGGTGWS
Ga0181590_110173831	3300017967	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLNDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181585_101515106	3300017969	Salt Marsh	NRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181585_105911941	3300017969	Salt Marsh	NDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181576_105130321	3300017985	Salt Marsh	KVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWS
Ga0181576_106587251	3300017985	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHEDYMEREYAWETERAIRGGTGWS
Ga0181569_102535063	3300017986	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEREYAWETERAIRGGTGWS
Ga0181569_110392391	3300017986	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181600_101582164	3300018036	Salt Marsh	MTTYEKMTTRELDGWIRECGQDLRDNSETYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181579_106380592	3300018039	Salt Marsh	YEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181579_106856581	3300018039	Salt Marsh	TRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEREYAWETERAIRGGTGWS
Ga0181601_100660742	3300018041	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYSPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0181601_101552994	3300018041	Salt Marsh	MTTYEKMTTRELDAWIREGGQDLRDNSETYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181606_106383671	3300018048	Salt Marsh	MTTYEKMTTRELDGWIRECGQDLRDNSETYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0181572_103750541	3300018049	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADYMRREYAWETERAIRGGTGWS
Ga0181572_104476003	3300018049	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHEDYMEREYA
Ga0181572_107251382	3300018049	Salt Marsh	VKVNRHHLENDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181592_103786952	3300018421	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0181593_107285093	3300018423	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRLHHADWLEREYAWETERAIR
Ga0181593_112096581	3300018423	Salt Marsh	NMLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181591_105237183	3300018424	Salt Marsh	WLLNMLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181591_107852522	3300018424	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYKLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAI
Ga0181591_111131351	3300018424	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0181566_107580951	3300018426	Salt Marsh	WLLNMLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181566_110395601	3300018426	Salt Marsh	EKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEREYAWETERAIRGGTGWS
Ga0181568_103038424	3300018428	Salt Marsh	HPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181568_108261421	3300018428	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEREYAWETERAIRGGTGWS
Ga0181568_112237671	3300018428	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADYMRREYAWETERAIRG
Ga0194022_10001143	3300019937	Freshwater	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRVRHADWLEKEYAWETERAIRGGTGWS
Ga0181595_103119451	3300020053	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0181575_100337669	3300020055	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADYMRREYAWETERAIRGGTGWG
Ga0181575_104806431	3300020055	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTSAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWS
Ga0181574_103083992	3300020056	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0181574_105560113	3300020056	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWE
Ga0181588_102129021	3300020168	Salt Marsh	WESLDPPKEWLHWLLNMLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0181578_1000856115	3300020189	Salt Marsh	MLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKE
Ga0181578_103468702	3300020189	Salt Marsh	MTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0181578_103895601	3300020189	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNTQTYTSAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWG
Ga0181570_103158681	3300020207	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTSAKYRMVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWS
Ga0213866_104471531	3300021425	Seawater	MTTYEKMTTRELDAWIREGGKDLSENAQTYTPAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWS
Ga0222718_100676895	3300021958	Estuarine Water	MTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0196899_11362501	3300022187	Aqueous	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0255781_100297085	3300022934	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRVRHADWLEREYAWETERAIRGGTGWS
Ga0255780_101704281	3300022935	Salt Marsh	LENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEREYAWETERAIRGGTGWS
Ga0255770_100260181	3300022937	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYKLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTG
Ga0255754_103036412	3300022939	Salt Marsh	LENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHEDYMEREYAWETERAIRGGTGWS
Ga0255778_101065011	3300023084	Salt Marsh	MLDSVKANRHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0255778_102483751	3300023084	Salt Marsh	LNMLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRVRHADWLEKEYSWETERAIRGGTGWS
Ga0255774_101075663	3300023087	Salt Marsh	MLDSVKVNHHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0255784_102513611	3300023108	Salt Marsh	SVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0255760_105438261	3300023115	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSENAQTYTPAKYRLVAHMVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGW
Ga0255761_101379621	3300023170	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIR
Ga0255761_105126021	3300023170	Salt Marsh	VNRHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0255776_103846122	3300023173	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYKLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0255777_105591881	3300023175	Salt Marsh	DRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0255772_101478184	3300023176	Salt Marsh	MTTYEKMTTRELDAWIREGGKDLCDNAQAYTSRKYMLVAHIVRSAVREKLRRLHHADWLEKEYAWETERAIRGGTGWS
Ga0255763_11626164	3300023273	Salt Marsh	DRMTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0208149_11504432	3300025610	Aqueous	MLDSVKVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0208899_11273282	3300025759	Aqueous	MTTYEKMTTRELDAWIREGGKDLCENAQAYTPAKYRLVAHMVRSAVREKLRRVRHADWLEKEYAWETERAIRGGTGWS
Ga0208767_10408936	3300025769	Aqueous	MSVFYKMTTKELDAWIREGGKDLCDNAQTYTAAKYSLVANMVRSAVREKLRRIRHADYMQREYAWETERAIRGGTGWS
Ga0208917_11517242	3300025840	Aqueous	KVNRHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS
Ga0208917_12758701	3300025840	Aqueous	RHPLENDRMTTYEKMTTRELDAWIREGGKDLSENAQTYTPAKYRLVAHMVRSAVREKLRRVHHADWLEREYAWETERAIRGGTGWS
Ga0208644_12189722	3300025889	Aqueous	MTTYEKMTTRELDAWIREGGKDLCDNAQTYTPAKYRLVAHMVRSAVRERLRRLRHADWLEKEYAWETERAIRGGTGWG
Ga0209929_10078603	3300026187	Pond Water	MTTYEKMTTRELDAWIREGGKDLCENAQTYTPAKYRLVAHMVRSAVREKLRRVRHADWLEKEYAWETERAIRGGTGWS
Ga0348335_051422_1294_1530	3300034374	Aqueous	MTTYEKMTTRELDAWIREGGKDLSENAQAYTPAKYRLVAHMVRSAVRERLRRLRHADYMEREYAWETERAIRGGTGWS
Ga0348335_075536_898_1158	3300034374	Aqueous	RHPLENDRMTTYEKMTTRELDAWIREGGKDLSDNAQTYTPAKYRLVAHMVRSAVREKLRRLRHADWLEKEYAWETERAIRGGTGWS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F082612

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences