Scaffold Ga0193751_1000216

Overview

Basic Information

• Taxon OID: 3300019888
• Scaffold ID: Ga0193751_1000216
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 51088
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 41 (74.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8924
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000065	Metagenome / Metatranscriptome	2788	Y
F066217	Metagenome	127	Y
F075880	Metagenome / Metatranscriptome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193751_100021614	F066217	GGAGG	MKRPRVSSFALCAGLTLTFALGIVPPLTMAQDARPIVGDWSGTLNPGAQPKKRIVVHISAAQDGSLNGTIDYPDQDTSGIQLTAITYTESVLHFESTPSLTVYDGTMNQDHSTITGTMKQAGASLNLVLKRTP
Ga0193751_100021622	F000065	AGGAG	LFVKGNAQAFFETSTGKPMNKSIAKLRKSPQPPLSHPGATPDSDRAKPAPLADPAANESELSPGDRVEGLGNFGIPTGQLGTVEQSNEEDAVVKWDDDGRMRLHQPWLKKV
Ga0193751_100021638	F075880	GGAGG	VYDVELVRLICLDINNAKDDPQKEQELISLLQAVIREDQEEMRIRMAFLAKRYAAVISDAKAAD