Scaffold Ga0193747_1000077

Overview

Basic Information

• Taxon OID: 3300019885
• Scaffold ID: Ga0193747_1000077
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 57201
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 45 (80.36%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8925
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000173	Metagenome / Metatranscriptome	1777	Y
F001983	Metagenome / Metatranscriptome	608	Y
F015379	Metagenome	255	Y
F016576	Metagenome / Metatranscriptome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_100007723	F016576	GGAGG	MKNSIKVIGLTCLLLGIPACLYADRAHDLAKLAAKQKAATGCNPASLNTQTCHAQFPTGCTDSAHRYDAYLNFLKDQVPGPALASTALLNGNDSQSLEGKIPKGLSSANHAKSAPALAGLGEGNIVTVIAYLYFVEDTSKGAHVKPPIGETANCKLQLPDSYDYHIGLGFDPALAQQILKTKPKPVFGKPGPIDKTSVVAEMTPHTRAPKWTFARVNSLQGQQVKVVGQLMIDNVHLNVNDDCSFPGATASCWRSTVWEIHPVTQFYVCNLKNKLCDQSSPDSAWTSLDNVP
Ga0193747_100007752	F015379	GAG	VRPFIKCLYSDVLGSINRESLDREVLIDDLGHGRRGIAVEILMPLYFGGKETLK
Ga0193747_100007753	F000173	GGAGG	MKTFEVQFRYRDRNEGTVESTVKVDASSLPGAVAKAAREFVKGLDRKQRFDMNKNGLEITAKSAGTTTEAQAQKSAETAAG
Ga0193747_100007754	F001983	AGGA	MTRKNTWARLAAAVVLSLPLTACNDTKTQQQNEQLKAHVAELQKENGQLGNDLETITAARDALTKENEALKAEIKARKTRRSGAKAASRKRHRS