Scaffold Ga0193747

Basic Information
Taxon OID	3300019885 Open in IMG/M
Scaffold ID	Ga0193747_1000009 Open in IMG/M
Source Dataset Name	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300019885 Open in IMG/M

Scaffold ID

Ga0193747_1000009 Open in IMG/M

Source Dataset Name

Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1m2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	248640
Total Scaffold Genes	203 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	173 (85.22%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (100.00%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

248640

Total Scaffold Genes

203 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

173 (85.22%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location Name	USA: East River, Colorado
Coordinates	Lat. (^o)	38.8925	Long. (^o)	-106.9111	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: East River, Colorado

Coordinates

Lat. (^o)

38.8925

Long. (^o)

-106.9111

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000678	Metagenome / Metatranscriptome	940	Y
F000783	Metagenome / Metatranscriptome	893	Y
F000923	Metagenome / Metatranscriptome	833	Y
F003414	Metagenome / Metatranscriptome	488	Y
F003732	Metagenome / Metatranscriptome	471	Y
F081417	Metagenome / Metatranscriptome	114	Y
F093617	Metagenome / Metatranscriptome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193747_1000009106	F000678	AGGA	MDKFEEFGKRVDEEFARIKSIKNFEDFGKRVDEELARVKSFVKEEVAPETEKRTAQFLREVSEKFSEAAAWIEARNAARNAQNGQHPPSAQPPQNPRSS
Ga0193747_1000009174	F000923	GAG	MKTKDENRKWMWMFLTALVSLQMYFVWELLAVFALFAVGFAAIAFAVGSLYMLHRGWALAVERIADSRHPVMVAMRQGIYTIEDVARRTIRRPGSAPAR
Ga0193747_1000009191	F000783	GAGG	MVAAAGVWKKKRDDLKTKRNLLFETYAKDPQNFHLAREIKEIDDEIAEYTQHVEQERRAEQRAASPAGKLVTSPK
Ga0193747_10000094	F081417	AGGAG	MDKNPTPRSTWWGRADWFVFVPWFLVFASFWIYLFGPDRAPWTEAMHEFYGMRRTAEIHTPWLMFGSLLIILYSFTLFLRRRLLFGRVARSWTIAIAILFIVLAAATGLAALATYASSFL
Ga0193747_100000960	F093617	GGAG	MTSTLNFGDSPEAALSSTDPEQLYTREKKFLDERRVLPLVALPEYIGLSQNVRDWRSARSGEWPLADVWLDLVEPSPAETGNSNAPGTTVAQSPVASPGAKP
Ga0193747_100000966	F003732	GGGGG	MSMKEKLLFVWLLVVVAFSFVFRHFWASAVYALGRAVALNLVSLPGLAKLAAGICGVGFL
Ga0193747_100000981	F003414	GGTGG	MRKRPAIPWDTEVQVRPVTQPRTAEASSVPDDLVPELQLELPPFPGQLTSVRTAPQRPRVSTPPSAATENDAEKLEAPTIALQVTPQESAVAQQQTKQSLGIAEKNLESARGKNLNAAQSDLASKIRGFIKDAREAAQIGDWSRARSLAKKAQVLSEELAGSL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0193747_1000009

Overview

Ecosystem & Geography

Associated Families

Sequences