 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300019869 Open in IMG/M |
| Scaffold ID | Ga0193705_1003725 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3348 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: East River, Colorado | |||||||
| Coordinates | Lat. (o) | 38.9203 | Long. (o) | -106.9495 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002984 | Metagenome / Metatranscriptome | 515 | Y |
| F015316 | Metagenome / Metatranscriptome | 255 | Y |
| F045028 | Metagenome / Metatranscriptome | 153 | Y |
| F100870 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0193705_10037252 | F002984 | N/A | MRTTTVARRFSLALVAGAIAAALSCADPSPVGLDVPAFDAVVKSAGAGLVPCAQTYDSVTQVIGPAGGLIAVGHHFLWVDTMALSDTVRITAVAPADSVRWVRFQPDGLQFRTNGAGRSAILYTTYKDCGVPTADTLRIAQVSDSLGILGYLETYAQVRRRSWSQGNQYVYGVLHHFSQYAVAW |
| Ga0193705_10037253 | F045028 | AGGA | MTSNRIFVRRLIPLVLLAASCSDPSPTGADLATPGLLAGKVKTATAPSFVQCSPVAYDSVSQVIGPAGGWFVVGHNVLWVDSLALSAPVKITAVAPSDTIRLVRLHPEGLVFKTGTHGLGAVVATTLDNCKLRRNALPRIANVTDSLALVEYMESPAAVVDSMLIARFRTDSGGWTPYWAFGALHHFSNYAVAW |
| Ga0193705_10037254 | F015316 | AGTAGG | VGDSAALADTVSITAVAPAGTVRWVRFQPDGLQFQTNGAGWSAVLATTFSDCGVPTVDTLKIAQVTDSLKVIRYLGAPDSTWIQSTRRRGVSEIQYVAGVLHHFSQYAVAW |
| Ga0193705_10037255 | F100870 | GGAGG | MALRRALIPLALLAALTVVASCGDPSPTGVPAFQRGGRWTGLTKKGAGLVTCSQTYDSVTQVVGPAGGLIAVGHHYLWAIPLRSRTR |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |