Scaffold Ga0193748_1004371

Overview

Basic Information

• Taxon OID: 3300019865
• Scaffold ID: Ga0193748_1004371
• Source Dataset Name: Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1s1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1133
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location

• Location Name: USA: East River, Colorado
• Coordinates
  • Lat. (^o): 38.8926
  • Long. (^o): -106.9111
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002111	Metagenome / Metatranscriptome	592	Y
F012223	Metagenome / Metatranscriptome	282	Y
F091817	Metagenome / Metatranscriptome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0193748_10043711	F012223	N/A	IALLAFVVAWKAGHFHNLAQAARIPLLIDEPDYYTPDWALDEEEWDDVHAER
Ga0193748_10043713	F002111	AGAAG	MAAALPFVVYSSCSEVVVPAADWAAVYASLQALKAHVQEYPGCQGFDVFFRAEPEGAVRVHCYTTWDTLVQLEVFLERGYTFERLLADVGGDIKLEKSLVMEKVF
Ga0193748_10043714	F091817	AGAAGG	MAERRRRLRLRPGRPLSGYRDVGAPDARHSRRAVYRAWVILAMMILLYMAVALTIYFIEPGLR