Scaffold Ga0181359_1105364

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1105364
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1028
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Methylophilaceae → unclassified Methylophilaceae → Methylophilaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000473	Metagenome / Metatranscriptome	1097	Y
F011938	Metagenome / Metatranscriptome	285	Y
F080048	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_11053641	F080048	GAGG	MEKILCYSCNKSKNKLEAKKSALLPINLLICETCISGKLEPRF
Ga0181359_11053642	F011938	GGAGG	VKEYYDITHVVFIHAEDLHGTVEKLGAYASVVNYNKNGIEYNDLMENEEFTIVDEIVFTHIEDSI
Ga0181359_11053643	F000473	AGAAG	MFIDKGQDRLKEHFKYGVNEWTGEPNKPVFYTPEMKKAVHQIKKPSMLLMDIVMYPQFLALRLYEDNFLQFEGTKKEMVIDYVTKVKRLLESYGVRCELEGKPSERVL