Scaffold Ga0181359_1051332

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1051332
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1590
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000263	Metagenome / Metatranscriptome	1424	Y
F000441	Metagenome / Metatranscriptome	1136	Y
F000852	Metagenome / Metatranscriptome	860	Y
F001019	Metagenome / Metatranscriptome	804	Y
F050154	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10513322	F000852	AGGA	MTTKREYLKAQGITVGVRGRFSGAAKVALAEAAAKGITFTVEAPVSKAK
Ga0181359_10513323	F000441	GAGG	MRMSDIYINDQLSKAQALLWSGSLHEVDEAHNIVSNLIQDRLEQVSN
Ga0181359_10513325	F001019	AGGA	MSYEPSLEILEMEYSCSPGGVDTFEVYDKTDIPLSVPIYETESLTDAVLYCYNLGKDFTVKTLAEWNERELAYEASR
Ga0181359_10513326	F000263	GAGG	MNAEDIGLPPHLQRMVNYDINGLDIMHGELKNLMLIWEKELENAQAIEDESEEAMDSMERKYCEGFLDALTALYKLTYDLSFAIGIRTENRKDGHI
Ga0181359_10513327	F050154	N/A	ISLNQDLEGDYNVQSKINIQGQIMATEHLLSVATDIMNNNERI