Basic Information | |
---|---|
Taxon OID | 3300019784 Open in IMG/M |
Scaffold ID | Ga0181359_1047212 Open in IMG/M |
Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1663 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Archaea → unclassified Archaea → archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Michigan | |||||||
Coordinates | Lat. (o) | 43.1881 | Long. (o) | -86.344 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F009604 | Metagenome / Metatranscriptome | 315 | Y |
F010397 | Metagenome / Metatranscriptome | 304 | Y |
F023346 | Metagenome / Metatranscriptome | 210 | Y |
F045085 | Metagenome / Metatranscriptome | 153 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0181359_10472122 | F009604 | N/A | MIKCGCGNEIHSERYELGYKICLTCGDKSAKRSQKFGYLHFGHKTAGSIVITSKKAFDNYTKVSYRKGKASNMAYASRLSTSF |
Ga0181359_10472123 | F023346 | N/A | MKHTPNIVSKNIIITYAQKIRSVQSEQIDPYIELIEQELIKIYPELKDREDNALNWAYDIINETSNNDVVETLNRLDGIVTNERKSQWICDHCGKNTYNDDCEYLFGKNHIGCVLSEDIKNREHSDPDYILDSNLRKFTELESELRHTKRQLVNLELKLERLRGDYPHEPTN |
Ga0181359_10472124 | F045085 | N/A | MNKVIDLTVGLVFGSIFAIGLLIVLTIFFVVLVPFIYYFTVKEVLKSLTKTK |
Ga0181359_10472126 | F010397 | AGGA | MNPSEFERTKPTITMKKINDLIKLIDEERVKTEILYKDRSRSLGDIKNLLLDMKDSFKKG |
⦗Top⦘ |