Scaffold Ga0181359_1036869

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1036869
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 1895
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F002245	Metagenome / Metatranscriptome	578	Y
F004840	Metagenome / Metatranscriptome	421	Y
F006744	Metagenome / Metatranscriptome	365	Y
F011299	Metagenome / Metatranscriptome	292	Y
F017995	Metagenome / Metatranscriptome	237	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10368692	F000447	AGG	MGYIEIFRMDNEGAGWVDLSEATPDELFNIELGLLEEGAFE
Ga0181359_10368693	F006744	AGG	MNLDEFKKHVTAQREVSKAEALSVLSATITTQSNERENLNG
Ga0181359_10368694	F017995	N/A	MKELIEIISANCDECGGAGFLFFGNENNYDIEPCSCIADLSDELNVDWVNN
Ga0181359_10368695	F004840	N/A	MYKITCAYDSEPIHYIREYENEFGAWENFFLFTDWGFADEYSTVNLYTPTGKCHTKVFYREGRRVVVK
Ga0181359_10368696	F011299	AGAAGG	MTRKDYVAVAEILNFASDKTHPAIFSKMVNDFAVMFAKDNDRFDVNRFHEASGYNVPNFNSR
Ga0181359_10368698	F002245	N/A	MKVPHTVVFEAIIDLDKIPANLLPALIALSETDVLRMCKEATLHALAESKVLQIANENNTWAEVIIKEGE