Scaffold Ga0181359_1027099

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1027099
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2201
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (100.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000447	Metagenome / Metatranscriptome	1128	Y
F006744	Metagenome / Metatranscriptome	365	Y
F007363	Metagenome / Metatranscriptome	352	Y
F017995	Metagenome / Metatranscriptome	237	Y
F024549	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_102709910	F007363	GGAGG	MKNYSIADLLVDQYYAPNSVSRRFNGGIINHAEKRENVWAGNNNQVFAIRYRPTGSLNDNWATVSVRTED
Ga0181359_10270994	F024549	GAG	MYKLFTYYDGNLEFTHQFSDALLAFEAFARCKDYGFAKEYATYNLTMPNGKMYTKNFNVLGMVSAK
Ga0181359_10270995	F017995	GGA	MSKMKEYIEIIAANCDECGGAGFLFFGNENNYDVEPCDCIADLSDELNVEWVNK
Ga0181359_10270996	F006744	AGGAGG	MNLDEFKKHVLATREASRVEALSVLSATITTQPNERENLK
Ga0181359_10270997	F000447	AGG	MGYIEIFRMDNEGAGWVDLSEATPDELFNIEIGLLNEEAL