Scaffold Ga0181359_1019694

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1019694
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2544
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003049	Metagenome	510	Y
F008741	Metagenome	328	Y
F030060	Metagenome	186	N
F071001	Metagenome	122	N
F103229	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10196941	F008741	GAG	MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYQGVFDLTSYVKAGHRQGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDEKPAEGLPESYNLVAPFGLSQGHYRNPLELIVRARQTMGKDNFFVLCPDEIKIQGLSTYTAPSVEQMAKAIRGATDFWAINSTPIILASATRRDKQTSFFPQKNEWETD
Ga0181359_10196943	F030060	N/A	VAGGRVLDLGCAFWTEAERQEANGTTKYFLSQKPEFYMGVDMNQGDIQTLSQQYPQGKFLCEKADSAPQMNTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDTWLKEFIAWFDSIGFECYRHDSVSFCPEISVIYGRLKC
Ga0181359_10196944	F071001	GGA	VQEISIHDPFGRALARYTYNLDVGLEIGGGTGDGSTQCIRTKKLFSIENHPDRIGRHSMNLSARGGVAINGTATLSKLWMNKNDIEEFYRNPLATS
Ga0181359_10196945	F003049	AGGA	MKSAKPAIGCRKAKKGEDTKGLGIIKFGKSRLDPTKYVKVDITYDEKAEKDLYECGMIALRHDKEAVIQYVIVKALTGYAKCKK
Ga0181359_10196946	F103229	N/A	YSDNEFTDRAYAEQAVVEARHIEFKHDNPMFNGGQPDEQLKNHNKPEFYEKGKAIYEKRKASNWM