Scaffold Ga0181359_1017010

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1017010
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2709
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Associated Families: 7

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030670	Metagenome / Metatranscriptome	184	Y
F032536	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F048123	Metagenome / Metatranscriptome	148	Y
F062447	Metagenome / Metatranscriptome	130	N
F078229	Metagenome / Metatranscriptome	116	Y
F104482	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10170101	F062447	AGGAG	MKHKIFWEKNSRVKGVVPSAQIINKTSTDKFPCDAVTIRMYNLNDKNPTATAYFYGKEAQGSSWNGSNYTYAETKLMVTFDKDKEGYSFNGGAKSFSLQDIKEVLDSVRETLNKL
Ga0181359_10170102	F032536	GGA	MSERKTFEELMRSFRFHKNPILNWFLGEVNYYSHTYLNVKWDLKNKLQKLIRGYSDSDCWNLPQSTAKFMLPRIKHLRQNYHSLANRHHLIIDDKIVPYVGKEDDFVFNTTLGCHIDKTTGLEISLDQKEYEYVLDEIIFALQTIVDEDDINVSLEEVYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLMLLGLYFKDLWD
Ga0181359_10170104	F104482	N/A	MKKQKNKMTSEEFEKAMKAQGRLVSKVYYRITFKGVGLYILNSFQFKLLPKFFYMNGKYFTEFGFNWLGWIFEFQWNR
Ga0181359_10170105	F048123	GGA	MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEVMDLFDFKKGEYLVTDESSIGDFEKQNINPKKLQKFKKKYKFSLTNNSNISKIAERMYNFRPF
Ga0181359_10170106	F034827	N/A	MKYTITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHAIYMKIKVPNTTSVNILDLGDGKAYDFSSKKRNTLNDPDEQQGNRVYKLNAKINIVIL
Ga0181359_10170107	F078229	N/A	VSKIKYTYYIEQDKDKDGNLVQGWSIYKTPLVKTIKVKTFKKLKDADAFLDNYESN
Ga0181359_10170108	F030670	N/A	MKVIRYIKELEDEFGEPLDKWAVYEEIQKPNYPHANFIDAKIVKTFTSPYHARNWMENDGKRIN