Scaffold Ga0181359_1013825

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1013825
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 2948
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (84.62%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F018714	Metagenome	233	Y
F051884	Metagenome	143	N
F088307	Metagenome / Metatranscriptome	109	N
F093284	Metagenome / Metatranscriptome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_101382510	F088307	GAGG	MDVEHYLDKGRQENEDILDKSAFKVSQILRIFVEGIDKTKFVYMYILLYNQMGQGPDGDENMRHWLNTYNTHLEFCPADELLNKMPEIIGYLESFL
Ga0181359_101382512	F018714	GAGG	MTDYEYQKTLVVGAIIGACFTLLAFYMLKPSPQNHTVTPKTNFAVVDTYKGCDIVQWSDNQMATYKYFLDCSK
Ga0181359_10138257	F093284	GGAG	MTERAQNLMDQIWNIRGLNPDMTEKELVSSVLQVAVEHIQSYTAQNNMIVLDKNDLLQLAEELK
Ga0181359_10138259	F051884	GAG	MTEHNLPVPDDAPWLDTTYDGFDEEQIKKVLKAQRQAQKLLDAAHRVADGEVPLGKLIRLGHKDPMSVRVRYEYGAILLALVEECAYKKDELYLVNVRDILDIIEVLNNGC