Scaffold Ga0181359

Basic Information
Taxon OID	3300019784 Open in IMG/M
Scaffold ID	Ga0181359_1012809 Open in IMG/M
Source Dataset Name	Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Draft

Basic Information

Taxon OID

3300019784 Open in IMG/M

Scaffold ID

Ga0181359_1012809 Open in IMG/M

Source Dataset Name

Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Draft

Scaffold Components
Scaffold Length (bps)	3041
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (80.00%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (100.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

3041

Total Scaffold Genes

10 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

8 (80.00%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (100.00%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location Name	USA: Michigan
Coordinates	Lat. (^o)	43.1881	Long. (^o)	-86.344	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Michigan

Coordinates

Lat. (^o)

43.1881

Long. (^o)

-86.344

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003658	Metagenome	474	Y
F008237	Metagenome	336	Y
F010680	Metagenome / Metatranscriptome	300	Y
F035280	Metagenome	172	Y
F046323	Metagenome	151	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10128091	F046323	GGAG	MKKQFSVTYETKGVKIVNVTLPEGEDLPADWDSLTMKQRDEWLYDNQDEAHLIWTDEHEGEAVNILPITHLKAVV
Ga0181359_10128094	F003658	AGG	MFDLRGKPIMTCVCGCKMFIVTVMWDEEERNVGWYDLKQECKECGAISTAPTEIDWKD
Ga0181359_10128095	F035280	GGA	MPEKKVGKFWISWGRTSGFSLGFAIDKYHWSIDLGFWYIGQEY
Ga0181359_10128098	F008237	AGGA	MNWERIEPWQYVVDAVAYEYHKKFDSIESEDIRQCLYKWFVEHPNKLDTWEAIGPKDAKNLIYRSLRNEALDYCQKWKAKSGGYEVSDVFYYEADMVEALLPMVLRAEWGVTHKLNLGRPGRPSAPSEGGNLMSMMIEVDYGYYKLTKDDRKLLFLRYAEGLDFGVIAEDMELGSEDTARMRHKRAIKKLINKIGGFRPWSDSDLPNKKGNEVDSQRKPEEDL
Ga0181359_10128099	F010680	GAGG	MIVTLTKDEVRVCANLAIERWLTKFGSTDRPNYAAGKRLGKLEPEINANIRANIAEWAVARTYNLQWSVPWYPNEYHKQRKNIPDVGNVEVRTVRTRSEIPFWKKDVGRTIFGVKVLDEEYYSTVEIYGSFNADEYMTEEYYQADIDGWRVPVSQIQEVTIA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181359_1012809

Overview

Ecosystem & Geography

Associated Families

Sequences