Scaffold Ga0181359_1012613

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1012613
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3060
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000545	Metagenome / Metatranscriptome	1038	Y
F000645	Metagenome / Metatranscriptome	962	Y
F002241	Metagenome / Metatranscriptome	579	Y
F009683	Metagenome / Metatranscriptome	314	Y
F059096	Metagenome / Metatranscriptome	134	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10126135	F002241	AGGAG	MGRQGMSKPHSIGYIKQLMEWGFDKEFIARDCGINLASLETRLRRSKERERRNGNQGTESGTSSSKPNS
Ga0181359_10126136	F000545	N/A	MRQDAHPFKCSNCALVTAHIELKRYDTSDIAEAPEEVWLIECQRCFIQRIIYPSDRVTTKEDDILRCDKCGGWKMKAGHCRVCRLAAGFEKQMEKYWTGGNTLERPYDATL
Ga0181359_10126137	F000645	GAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHILAESLVANCDVYIIKTELYRTEADAHPWTTGLSSESKSKQYALELAETGSLGRALNLAGYFAKVNQTPKKAIETTKPALAEFIKEQRPNDPEPIVWDVTAIAEQLGAEVIDEMPLCKCGRGPMILKSGTKDGKEYRGYTCPSRDRADQCPARWMKIGADGHWVFQK
Ga0181359_10126138	F059096	GGA	MTPAVWKVQSETPLRKGQVRFYCQPCADEAQNWPDGTFYSLKEQLEDAISDFAGREKLDVELPR
Ga0181359_10126139	F009683	N/A	GVFGTHLKPKPLMKVIREEGQVSDSQRSLSDWLEDAGNTLLDRGIEYGDPRHNLLRIFKISKALGIQLRDPSDLAIIAIATKLSRMVESPEREDSYLDLIGYAAILGRLRFSTPEDWDDIEFDSQS