NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181359_1011774

Scaffold Ga0181359_1011774


Overview

Basic Information
Taxon OID3300019784 Open in IMG/M
Scaffold IDGa0181359_1011774 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusDraft

Scaffold Components
Scaffold Length (bps)3147
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (100.00%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000821Metagenome / Metatranscriptome876Y
F003212Metagenome / Metatranscriptome500Y
F037113Metagenome / Metatranscriptome168Y
F044984Metagenome / Metatranscriptome153Y
F060700Metagenome / Metatranscriptome132Y
F083706Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0181359_101177410F000821AGGAGGMNEEYLKAKFDLCISEAEKDLQQEEIARAIKNLQRANSALTRLFGFEEETENE
Ga0181359_101177412F044984GGAGGMTDEVKRRMATASRKAIRDRNYRRARDRALVRLAHLYPDTYKQLLEMEKIEDEKQGKNWISIDGTTVLSVGVHTRANSVPDVAGRTDYDSTDEGYNGGEA
Ga0181359_10117742F060700GAGGVLQNGGGSCILFLSAQSRADFRKGLEMKKTLQELAAELNIDKKYFENNFLMLDNRYAVMQDEKGLHLTDVFSWASFNPIKIGRQSNATVKGLQFQLGQYKVYIKQLQEAK
Ga0181359_10117746F083706GAGGMQYLTSRGWLVVGILIGLATWGLWEVASHLLWTGSGWEWCESLLECEREGK
Ga0181359_10117748F003212AGGAGGMKDKWLVTIEIETYDGDPKSWNWDNLYIGEEDIKIISSDFKGRVLPEEEASE
Ga0181359_10117749F037113AGGAGGMSKWTVWAGGSEVNWQHYTHKIDAERIAEFWREVKGYDEVVVEEVA
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