Scaffold Ga0181359_1011163

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1011163
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3219
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009808	Metagenome	312	N
F052594	Metagenome / Metatranscriptome	142	N
F054865	Metagenome / Metatranscriptome	139	N
F099306	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_10111633	F052594	AGG	MAAKTYGLDKKQIALCDAMIAKYPKGISTNNVVSSASTLVSFYNSKDERNKQFYEYMNPERMVSLLWQVVKINNEKEDVKESAVRLLNKLLQDIVVK
Ga0181359_10111634	F099306	N/A	MIQEKVIIKRLNNLEKIYIAESLKDKNRQDKWFMGIIEHRMKQEKTKLSLLKIGTHGC
Ga0181359_10111636	F009808	N/A	MKKNFNNQNFEWLFQDITSLMPKIIFTGIILTYLITAALNVYFLPLPLLLSIPASLMLQFGRFAVVFIDFLNPSEKRSKYPPRVAAIATVIALLELWFSIQGQSTGAEFFAMFFFIGAIICFGYVLEIQFIEKGIEAYGIGVKEPRTRRRVVREVTKTNISSTQPIKFTMAVCFILTVAYLPAQNNHFFAYNTMSVEKIDKGLLERRYYSDADESYTVDTITYDLLSGINLWDGYSRTTYDNTMFMTYGTQNFEYFPLAGVWKYKNKYYDYIGLLKFVSKYFKRNFLNKKITYGKIRRH
Ga0181359_10111637	F054865	N/A	MEVKTNRFIIKYREGIVSVAAKDVAEAIERFKELRIETCAKELTIVPEDEMYKRREEIFRKE