Scaffold Ga0181359_1009644

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1009644
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 3393
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F054028	Metagenome	140	Y
F061843	Metagenome	131	N
F077222	Metagenome	117	Y
F093846	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100964410	F061843	AGG	MSDNWSEIFRIFISNDGSYYLYLEEREACVDLIENISDEIELSDFAEIKKASKADLRDDFATMRLDNVRKNLPPMALKVAKLTERELLDLAQEIIQTVQDKNKIRLEIVK
Ga0181359_10096443	F054028	GGAGG	MKLVPTTETVKIQWFAILHDGSKMRNNKGFQHNAWDVKCSCGWESRTGGAIKACVQREVEAHKWDAHHYTWQASN
Ga0181359_10096444	F077222	AGGA	MRILWAVLTAIVAVGKGRRPLPWAILGFMGGWVALGIACLSRQRPLRPVPSWALNLGYQSQAKRAFAKIDTPKDLLD
Ga0181359_10096449	F093846	AGGGGG	MEIAIMIGAAGLALVGASLASILTNGTDDWAGQVKKAERSRAKMKKALSK