Scaffold Ga0181359_1002735

Overview

Basic Information

• Taxon OID: 3300019784
• Scaffold ID: Ga0181359_1002735
• Source Dataset Name: Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Draft

Scaffold Components

• Scaffold Length (bps): 5214
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (93.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (100.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location

• Location Name: USA: Michigan
• Coordinates
  • Lat. (^o): 43.1881
  • Long. (^o): -86.344
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005502	Metagenome / Metatranscriptome	398	N
F016963	Metagenome	243	N
F020510	Metagenome / Metatranscriptome	223	Y
F033352	Metagenome / Metatranscriptome	177	N
F072095	Metagenome	121	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181359_100273510	F033352	AGGAGG	VSEFRLIENIEVLACRNSAERVVKALNRGEVQQAKDLARKHEIAWHVTDREFQTLNQPHRNNDFCDDE
Ga0181359_100273513	F072095	AGGAG	VIRDLEKEGVLPATASQSYGSAQLSQTTALIDLQTKHRDLRNRLERIEDILKGLIEKQGASL
Ga0181359_10027354	F020510	AGGCGG	VSLQELLTMFSGRIIGTYTPEQYANCVREARANRMRWGMGQW
Ga0181359_10027356	F005502	AGGTGG	MRVAACIAALLGLANSQGSNVMIDLRPQPKKIKVRITGYWPGEDEWSSRYQSSTGTRLRAGRHCAVDPDIIPLWSKIRILNGKREWLAVDTGTAVKSKKASRGKLPVVDVFAASEKQFNAMRLPKVAMVEVCR
Ga0181359_10027357	F016963	GAGG	MIEVLPDETTHDQLLNRVRSLARQLAEAKAALAASEARENDLIDRIRGGL